Felix (Phd) Kokocinski
Director
Experience
Director
Gene-Test Bioinformatics Solutions GmbH
- Founding and running the company to deliver consulting work
Bioinformatics Scientist Consultant
Gene-Test Bioinformatics Solutions GmbH
Project work in genome informatics, specializing in NGS data and reproductive health, to enable clients make best use of their data and develop better products
Development of a pipelined system for the one-click pre-processing of single-cell sequencing data
Enable the optimization of the laboratory protocol through the analysis of PGT-A data from sequencing embryonic cells
Ad-hoc analysis and development of an analysis process of NGS data for quality control during product development
Volunteer
Nature Conservation Projects
Senior Bioinformatics Scientist
Illumina Inc.
Development of genetic testing applications for the market leader in sequencing technology
Product development from the lab kit to the software solution within the Reproductive Health business unit
Senior Bioinformatician
BlueGnome Ltd
- Development of in-vitro diagnostic tools for one of the UK's fastest-growing biotechnology start-ups using genomic microarrays and sequencing
Senior Bioinformatician (ENCODE Data Coordinator)
Wellcome Trust Sanger Institute
Organizing the flow of data for an international research project to create a reference gene set for the human genome
Line management for senior bioinformatician
Bioinformatician (Ensembl)
Wellcome Trust Sanger Institute
- Running and improving the Ensembl gene-prediction pipelines to annotate vertebrate genomes
Skills
Computational
- Programming: Main Language: Python; Other Languages (Some Experience): Perl, C/c++, Php, Java, Visual Basic, R, Ruby, Matlab, Javascript
- Databases: Mysql, Sqlite, Ms Access
- Platforms: Linux/unix, Windows, Osx, High-performance Clusters (Lsf/sge) And Cloud Computing (Aws)
- Other: Cvs/svn/perforce Version Control, Das, Html, Office, Graphics, Internet And Bioinformatics Applications, Ensembl Api And Gene Prediction Pipeline, Bioperl, Biopython, Next Generation Sequencing Data Handling, Labware Lims, Network Technologies.
Other Skills
- Standard Molecular Biology Laboratory Techniques
- Courses In Digital Image Processing, Time Management, Project Management, Business Administration.
- Ivd / Ldt Product Development Under Iso13485 (Medical Devices) Quality Control, Including Design, Risk Assessment And Documentation.
- Publication List At Pubmed: [Link]
Languages
Education
German Cancer Research Centre (DKFZ) Heidelberg
PhD, Data management and functional analysis of high-throughput experiments · Heidelberg, Germany
University of Freiburg and Heidelberg
Diploma/Masters, Molecular Biology · Biology · Heidelberg, Germany · 1.1
German Cancer Research Centre (DKFZ) Heidelberg
Masters thesis, Detection of genomic imbalances using DNA-microarrays with probe sequences of different complexity · Biology · Heidelberg, Germany
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