Nhu Loc Thuy (Loc Thuy) Tran
Ph.D. Researcher in Quantitative Genetics & Computational Biology
Experience
Ph.D. Researcher in Quantitative Genetics & Computational Biology
University of Cologne (CEPLAS – Cluster of Excellence in Plant Sciences)
- Generated and analysed large-scale RNA-seq data (>800 samples) using R, Python, and high-performance computing (HPC/Linux) systems.
- Integrated multi-omics data (genomic, transcriptomic, and phenotypic); applied Bayesian approaches and machine learning to study gene expression variation and inheritance of complex traits.
- Mentored B.Sc. and M.Sc. students in experimental design, programming in R/Python/Bash, biostatistics, data visualisation and scientific presentations.
M.Sc. in Biology (Fast-Track Ph.D. Programme, CEPLAS)
Heinrich-Heine-University Düsseldorf
- Conducted genome-wide association and genotype–environment analyses.
- Developed variant-calling workflows for 400 whole-genome samples.
- Thesis: Natural variation in seed secondary dormancy in Arabidopsis thaliana (Final grade: 1.0 – Very Good) - later published in Molecular Ecology (2025).
B.Sc. in Life Sciences (Major: Molecular Plant Biology)
HAN University of Applied Sciences
- Research placements during the studies (ERASMUS-funded):
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany
- German Centre for Integrative Biodiversity Research (iDiv), Germany
- Glasgow Caledonian University, Scotland – Minor in Food Sciences.
Industries Experience
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Experienced in Agriculture (7 years), Biotechnology (5 years), Education (4.5 years), and Food and Beverage (4 years).
Business Areas Experience
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Experienced in Research and Development (8 years).
Skills
- Advanced User Of R (6+ Yrs), Python (4+ Yrs), Bash (3+ Yrs), Git (3+ Yrs).
- Experienced In Rna-seq And Wgs & Multi-omics Data Integration.
- Experienced In Developing Bioinformatics Pipeline; Workflow Automation (Slurm Hpc/snakemake), Version Control (Git/github).
- Strong Background In Statistics, Bayesian Inference, And Machine Learning For Biological Data.
- Data Visualisation, Qc, And Reproducible Reporting (Rmarkdown, Quarto).
Languages
Education
University of Cologne (CEPLAS – Cluster of Excellence in Plant Sciences)
Ph.D. Researcher · Quantitative Genetics & Computational Biology · Cologne, Germany
Heinrich-Heine-University Düsseldorf
M.Sc. in Biology, Fast-Track Ph.D. Programme, CEPLAS · Biology · Düsseldorf, Germany · 1.0 – Very Good
HAN University of Applied Sciences
B.Sc. in Life Sciences, Major: Molecular Plant Biology · Life Sciences · Netherlands
Profile
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