Nhu loc thuy (Loc Thuy) T.

Ph.D. Researcher in Quantitative Genetics & Computational Biology

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Cologne, Germany

Experience

Oct 2022 - Jan 2026
3 years 4 months
Germany

Ph.D. Researcher in Quantitative Genetics & Computational Biology

University of Cologne (CEPLAS – Cluster of Excellence in Plant Sciences)

  • Generated and analysed large-scale RNA-seq data (>800 samples) using R, Python, and high-performance computing (HPC/Linux) systems.
  • Integrated multi-omics data (genomic, transcriptomic, and phenotypic); applied Bayesian approaches and machine learning to study gene expression variation and inheritance of complex traits.
  • Mentored B.Sc. and M.Sc. students in experimental design, programming in R/Python/Bash, biostatistics, data visualisation and scientific presentations.
Oct 2021 - Dec 2022
1 year 3 months
Germany

M.Sc. in Biology (Fast-Track Ph.D. Programme, CEPLAS)

Heinrich-Heine-University Düsseldorf

  • Conducted genome-wide association and genotype–environment analyses.
  • Developed variant-calling workflows for 400 whole-genome samples.
  • Thesis: Natural variation in seed secondary dormancy in Arabidopsis thaliana (Final grade: 1.0 – Very Good) - later published in Molecular Ecology (2025).
Sep 2017 - Jul 2021
3 years 11 months
Netherlands

B.Sc. in Life Sciences (Major: Molecular Plant Biology)

HAN University of Applied Sciences

  • Research placements during the studies (ERASMUS-funded):
  • Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany
  • German Centre for Integrative Biodiversity Research (iDiv), Germany
  • Glasgow Caledonian University, Scotland – Minor in Food Sciences.

Skills

  • Advanced User Of R (6+ Yrs), Python (4+ Yrs), Bash (3+ Yrs), Git (3+ Yrs).
  • Experienced In Rna-seq And Wgs & Multi-omics Data Integration.
  • Experienced In Developing Bioinformatics Pipeline; Workflow Automation (Slurm Hpc/snakemake), Version Control (Git/github).
  • Strong Background In Statistics, Bayesian Inference, And Machine Learning For Biological Data.
  • Data Visualisation, Qc, And Reproducible Reporting (Rmarkdown, Quarto).

Languages

Vietnamese
Native
German
Advanced
English
Advanced

Education

Oct 2022 - Jan 2026

University of Cologne (CEPLAS – Cluster of Excellence in Plant Sciences)

Ph.D. Researcher · Quantitative Genetics & Computational Biology · Cologne, Germany

Oct 2021 - Dec 2022

Heinrich-Heine-University Düsseldorf

M.Sc. in Biology, Fast-Track Ph.D. Programme, CEPLAS · Biology · Düsseldorf, Germany · 1.0 – Very Good

Sep 2017 - Jul 2021

HAN University of Applied Sciences

B.Sc. in Life Sciences, Major: Molecular Plant Biology · Life Sciences · Netherlands

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