Mustafa Karagöz - Postdoctoral Researcher

Q: Where is Mustafa based?

Mustafa is based in Detmold, Germany .

Q: What languages does Mustafa speak?

Mustafa speaks the following languages: German (Native), Turkish (Native), English (Advanced) .

Q: How many years of experience does Mustafa have?

Mustafa has at least 9 years of experience. During this time, Mustafa has worked in at least 5 different roles and for 6 different companies . The average length of individual experience is 2 years and 6 months . Note that Mustafa may not have shared all experience and actually has more experience.

Q: What is Mustafa's latest experience?

Mustafa's most recent position is Postdoctoral Researcher at National Institutes of Health (NIH), NHLBI .

Q: What companies has Mustafa worked for in recent years?

In recent years, Mustafa has worked for National Institutes of Health (NIH), NHLBI and Technische Universität Braunschweig .

Q: Which industries is Mustafa most experienced in?

Mustafa is most experienced in industries like Biotechnology , Pharmaceutical , and Education .

Q: Which business areas is Mustafa most experienced in?

Mustafa is most experienced in business areas like Research and Development (R&D) .

Q: Which industries has Mustafa worked in recently?

Mustafa has recently worked in industries like Biotechnology and Pharmaceutical .

Q: Which business areas has Mustafa worked in recently?

Mustafa has recently worked in business areas like Research and Development (R&D) .

Recommended expert

Detmold, Germany

Experience

Jul 2023 - Jul 2025

2 years 1 month

Bethesda, United States

Postdoctoral Researcher

National Institutes of Health (NIH), NHLBI

Led peptide inhibitor design against UPF1 using RFdiffusion, ProteinMPNN, and AlphaFold2/3; validated candidates with molecular dynamics simulations
Screened over 1 million compounds for ataxia fusion proteins via AutoDock Vina; confirmed top hits using GROMACS MD simulations
Developed RNA-seq analysis pipelines for nonsense-mediated decay (NMD) studies including isoform quantification and motif discovery
Modeled protein-RNA interactions using AlphaFold3 multimers integrated with BioGRID/STRING databases
Established computational workflows for transcriptomics and RNA regulation in iPSC-derived human models

Aug 2019 - May 2023

3 years 10 months

Braunschweig, Germany

PhD Researcher

Technische Universität Braunschweig

Investigated Legionella pneumophila virulence factors integrating structural biology and interactomics approaches
Utilized AlphaFold and Rosetta for modeling pathogen-host interactions; identified druggable targets for therapeutic intervention
Purified effector proteins and validated ligand binding using nanoDSF and surface plasmon resonance (SPR)
Applied human lung explants to connect molecular mechanisms with tissue-level responses to infection
Integrated AP-MS proteomics data with computational modeling to map host-pathogen interaction networks

Apr 2017 - Jul 2019

2 years 4 months

İstanbul, Turkey

Research Assistant

Türkisch-Deutsche Universität

Developed computational models for amyloid formation and disordered protein behavior
Designed peptide and protein variants using homology modeling, molecular docking, and high-performance computing
Established molecular modeling workflows for protein structure-function analysis

Feb 2016 - May 2016

4 months

Turkey

Project Assistant

TÜBİTAK Marmara Technopark (MARTEK)

Performed pharmacological assays and biosensor studies for preclinical drug testing
Supported automation-based in vivo and ex vivo drug validation protocols

Jun 2014 - Sep 2014

4 months

Portugal

Research Intern

Instituto Gulbenkian de Ciência (IGC)

Conducted pharmacological assays and in vivo studies on therapeutic candidates
Contributed to synthetic biology and high-throughput screening pipelines

Jun 2013 - Sep 2013

4 months

İstanbul, Turkey

Research Intern

Bogazici University

Performed molecular biology assays for drug testing and validation

Industries Experience

See where this freelancer has spent most of their professional time. Longer bars indicate deeper hands-on experience, while shorter ones reflect targeted or project-based work.

Experienced in Biotechnology (9 years), Pharmaceutical (4.5 years), and Education (2.5 years).

Biotechnology

Pharmaceutical

Education

Business Areas Experience

The graph below provides a cumulative view of the freelancer's experience across multiple business areas, calculated from completed and active engagements. It highlights the areas where the freelancer has most frequently contributed to planning, execution, and delivery of business outcomes.

Experienced in Research and Development (9 years).

Research and Development

Summary

Computational biologist with 8+ years of experience bridging experimental biology and computational innovation. Expertise in protein design, structural bioinformatics, and transcriptomics applied to therapeutic discovery. Successfully led projects from molecular modeling to validation in human model systems. Proven ability to integrate multi-omics data, develop computational pipelines, and translate findings into biological insights for undruggable targets.

Skills

Protein Design

Alphafold2/3
Rfdiffusion
Proteinmpnn
Rosetta Suite

Structural Biology

Molecular Dynamics
Pymol/chimerax
Gromacs

Computational Methods

Python/r Programming
Hpc/cloud Computing
Bioinformatics Pipelines
Bash Scripting

Transcriptomics

Rna-seq Analysis
Isoform Quantification
Motif Discovery
Nmd Studies

Experimental Techniques

Protein Purification
Nanodsf/spr
Mass Spectrometry
Mammalian/ipsc Culture

Specialized Knowledge

Host-pathogen Interactions
Drug Discovery Pipelines
Multi-omics Integration
Undruggable Targets

Technical Skills

Protein Design: Alphafold2/3, Rfdiffusion, Proteinmpnn, Rosetta
Structural Analysis: Pymol, Chimerax, Gromacs, Autodock Vina
Transcriptomics: Rna-seq, Isoform Quantification, Motif Discovery
Programming: Python, R, Bash Scripting
Computational: Hpc, Cloud Computing, Bioinformatics Pipelines

Languages

German

Native

Turkish

Native

English

Advanced

Education

Aug 2019 - May 2023

Technische Universität Braunschweig

PhD in Biology, Protein interaction and inhibition of L. pneumophila Mip and immunometabolism · Biology · Braunschweig, Germany

Oct 2015 - Jun 2018

Gebze Technical University

M.Sc. Molecular Biology & Genetics, Molecular characterization and identification of the interaction partner of the peptidyl · Molecular Biology & Genetics · Turkey

Oct 2011 - Jun 2015

Gebze Technical University

B.Sc. Molecular Biology & Genetics · Molecular Biology & Genetics · Turkey

Profile

Created

November 2025

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Frequently asked questions

Do you have questions? Here you can find further information.

Where is Mustafa based?

Mustafa is based in Detmold, Germany.

What languages does Mustafa speak?

Mustafa speaks the following languages: German (Native), Turkish (Native), English (Advanced).

How many years of experience does Mustafa have?

Mustafa has at least 9 years of experience. During this time, Mustafa has worked in at least 5 different roles and for 6 different companies. The average length of individual experience is 2 years and 6 months. Note that Mustafa may not have shared all experience and actually has more experience.

What roles would Mustafa be best suited for?

Based on recent experience, Mustafa would be well-suited for roles such as: Postdoctoral Researcher, PhD Researcher, Research Assistant.

What is Mustafa's latest experience?

Mustafa's most recent position is Postdoctoral Researcher at National Institutes of Health (NIH), NHLBI.

What companies has Mustafa worked for in recent years?

In recent years, Mustafa has worked for National Institutes of Health (NIH), NHLBI and Technische Universität Braunschweig.

Which industries is Mustafa most experienced in?

Mustafa is most experienced in industries like Biotechnology, Pharmaceutical, and Education.

Which business areas is Mustafa most experienced in?

Mustafa is most experienced in business areas like Research and Development (R&D).

Which industries has Mustafa worked in recently?

Mustafa has recently worked in industries like Biotechnology and Pharmaceutical.

Which business areas has Mustafa worked in recently?

Mustafa has recently worked in business areas like Research and Development (R&D).

What is Mustafa's education?

Mustafa holds a Doctorate in Biology from Technische Universität Braunschweig, a Master in Molecular Biology & Genetics from Gebze Technical University and a Bachelor in Molecular Biology & Genetics from Gebze Technical University.

What is the availability of Mustafa?

Mustafa is immediately available full-time for suitable projects.

What is the rate of Mustafa?

Mustafa's rate depends on the specific project requirements. Please use the Meet button on the profile to schedule a meeting and discuss the details.