Recommended expert

Ravindra Garde

Postdoctoral Researcher

Ravindra Garde
Braunschweig, Germany

Experience

Jun 2023 - Jun 2025
2 years 1 month
Braunschweig, Germany

Postdoctoral Researcher

Helmholtz Institute for Infection Research

  • Developed an agent based model to elucidate the dose-uptake discrepancy of antibiotics in bacteria
  • Fostered collaboration with microbiologists to develop a data driven framework for antibiotic dosing
Mar 2022 - Dec 2022
10 months
Leipzig, Germany

Staff Scientist

Institute for Drug Discovery, University of Leipzig

  • Pursued DFG Walter Benjamin fellowship, showcasing initiative and dedication to professional growth while contributing to high-impact research initiatives
  • Developed a pipeline for metadynamics MD simulation using collective variables to describe the opening of an anion channel
  • Docked a potential therapeutic to the study protein
  • Mastered vHTS and enhanced sampling MD simulations with PLUMED within 3 months, optimizing workflows for protein informatics projects
  • Participated in collaborative side projects to model structure of TLR4 bound to a protein using AlphaFold2 multimer
  • Contributed to RosettaCon by sharing insights on computational frameworks, strengthening professional networks and promoting innovative solutions in structural biology
Oct 2020 - Jun 2021
9 months
Jena, Germany

Staff Scientist

Matthias Schleiden Institute of Genetics, Friedrich-Schiller University

  • Transcriptome analysis of Sorghum bicolor infected by two formae speciales of Sporisorium reilianum
  • Facilitated the completion of a long stagnant project successfully
  • Helped a PhD student in the analysis of maize transcriptome data
Mar 2017 - Nov 2020
3 years 9 months
Jena, Germany

PhD Candidate

Max Planck Institute for Chemical Ecology, Friedrich-Schiller University

  • Successfully applied a minimal model to describe biofilm growth oscillations, and made further developments to the model
  • Forged collaboration within the research group and contributed to a comprehensive review article modelling host-pathogen interactions
  • Critical project, data, and performance assessment resulting in the publication in international peer reviewed open access scientific journals
  • Communicating science through oral and poster presentations at conferences
  • Managed and supervised practical course in metabolic and regulatory networks to master students every summer semester between 2018-2020
  • Supervised applicants of the IMPRS PhD recruitment in the years 2017 and 2018

Skills

  • Highly Skilled Computational Biologist With Advanced Competencies In Molecular Dynamics Simulations, Ngs Data Analysis, Systems Biology And Virtual High Throughput Screening
  • Solid Experience And Passion In Structure Based Modeling Of Macromolecules
  • Passionate About Clinical Applications Of Computational Methods
  • Experienced In Goal-oriented Project Development Within A Team Or Independently
  • Flexible And Adaptable Professional Thriving In A Multicultural Environment
  • Enthusiastic In Communicating Science To Multifaceted Audiences (E.g. Customers & Scientists) Verbally And In Writing
  • Md Simulations: Metadynamics, Targeted Md, All Atom Md, Qm/mm
  • Molecular Modelling: Alphafold, Rosetta, Amber, Gromacs, Plumed, Discovery Studios, Pymol, Schroedinger Suite
  • Programming: Perl, Python, R, Bash
  • Ngs: Transcriptome Analysis, Tuxedo, Galaxy
  • Other Tools: Confluence, Git, Jupyter Notebooks, Conda, Copasi, Celldesigner, Stella, Msoffice
  • Wetlab: Spectrophotometry, Basic Microbiology And Molecular Biology Techniques, Basic Protein Handling

Languages

Hindi
Native
Marathi
Native
English
Advanced
German
Intermediate

Education

Mar 2017 - Nov 2020

Max Planck Institute for Chemical Ecology, Friedrich-Schiller University, Jena

PhD · Jena, Germany

Oct 2014 - Jun 2016

Bioinformatics Centre, University of Pune

Master of Science, Bioinformatics · Bioinformatics · Pune, India

Oct 2011 - Jun 2014

Abasaheb Garware College, University of Pune

Bachelor of Science, Biotechnology · Biotechnology · Pune, India

Certifications & licenses

Data Scientist Bootcamp

University of Sorbonne

Bioinformatics National Certification (BINC)

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