Nuno (F. b.) O.

Researcher

Mem Martins, Portugal

Experience

Jan 2025 - Dec 2025
1 year

Author

Journal of Chemical Information and Modeling

CpHMD Container - a stochastic constant-pH Molecular dynamics container available to all. (Manuscript in preparation)

Jan 2025 - Dec 2025
1 year

Author

Journal of Chemical Information and Modeling

Improving the Estimation of pKa Values for All Titrable Amino Acids at the Water/Membrane Interface (In Review process)

Jan 2025 - Dec 2025
1 year

Author

Journal of Chemical Theory and Computation

Toward Accurate pH-Dependent Binding Constant Predictions Using Molecular Docking and Constant-pH MD Calculations.

Jan 2024 - Dec 2024
1 year

Author

Biophys. J.

Constant-pH MD Simulations of the Protonation-Triggered Conformational Switching in Diphtheria Toxin Translocation Domain

Jan 2024 - Dec 2024
1 year

Author

Pharmacol. Res.

A novel combinatory treatment against a CDDP-resistant non-small cell lung cancer based on a Ruthenium(II) cyclopentadienyl compound

Jan 2023 - Dec 2023
1 year

Author

Journal of Chemical Information and Modeling

Interfacial Dynamics and Growth Modes of B2-Microglobulin Dimers

Jan 2023 - Dec 2023
1 year

Author

Journal of Medicinal Chemistry

Fighting Multidrug Resistance with Ruthenium-Cyclopentadienyl Compounds: Unveiling the Mechanism of P-gp Inhibition

Jan 2023 - Dec 2023
1 year

Author

Toxins

Histidine Protonation and Conformational Switching in Diphtheria Toxin Translocation Domain

Jan 2022 - Dec 2022
1 year

Author

J. Chem. Inf. Model.

MembIT - a tool to calculate solute membrane insertions and deformations in molecular dynamics simulations

Jan 2022 - Dec 2022
1 year

Author

Journal of Chemical Information and Modeling

Novel US-CpHMD Protocol to Study the Protonation-Dependent Mechanism of the ATP/ADP Carrier

Jan 2021 - Dec 2021
1 year

Author

Computational and Structural Biotechnology Journal

Predicting stable binding modes from simulated dimers of the D76N mutant of B2-microglobulin

Jan 2021 - Dec 2021
1 year

Author

Springer US

pKa Calculations in Membrane Proteins in Methods in Molecular Biology: Computational Design of Membrane Proteins, Volume 2315, Editors: Irina Moreira, Joana Mourão, Miguel Machuqueiro. In Press.

Jan 2020 - Dec 2020
1 year

Author

Journal of Chemical Theory and Computation

Improved GROMOS 54A7 Charge Sets for Phosphorylated Tyr, Ser, and Thr to Deal with pH-Dependent Binding Phenomena

Summary

Computational biochemist currently integrated in the Machuqueiro Computational Biophysics Lab, specializing in constant-pH MD, enhanced sampling methods, membrane biophysics, and AI-driven peptide/drug design.

Experienced in computational technique application to health related problems, force field development, and inter-disciplinary collaboration across computational and wet-lab groups.

Languages

Portuguese
Native
English
Advanced

Education

Oct 2021 - Jun 2026

University of Lisbon

Ph.D. · Biochemistry · Lisbon, Portugal

Oct 2018 - Jun 2021

University of Lisbon

MSc · Biochemistry · Lisbon, Portugal

Oct 2014 - Jun 2018

University of Lisbon

BSc · Biochemistry · Lisbon, Portugal

Certifications & licenses

Licenciatura Degree in Biochemistry

Faculty of Sciences, University of Lisbon

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