CpHMD Container - a stochastic constant-pH Molecular dynamics container available to all. (Manuscript in preparation)
Improving the Estimation of pKa Values for All Titrable Amino Acids at the Water/Membrane Interface (In Review process)
Toward Accurate pH-Dependent Binding Constant Predictions Using Molecular Docking and Constant-pH MD Calculations.
Constant-pH MD Simulations of the Protonation-Triggered Conformational Switching in Diphtheria Toxin Translocation Domain
A novel combinatory treatment against a CDDP-resistant non-small cell lung cancer based on a Ruthenium(II) cyclopentadienyl compound
Interfacial Dynamics and Growth Modes of B2-Microglobulin Dimers
Fighting Multidrug Resistance with Ruthenium-Cyclopentadienyl Compounds: Unveiling the Mechanism of P-gp Inhibition
Histidine Protonation and Conformational Switching in Diphtheria Toxin Translocation Domain
MembIT - a tool to calculate solute membrane insertions and deformations in molecular dynamics simulations
Novel US-CpHMD Protocol to Study the Protonation-Dependent Mechanism of the ATP/ADP Carrier
Predicting stable binding modes from simulated dimers of the D76N mutant of B2-microglobulin
pKa Calculations in Membrane Proteins in Methods in Molecular Biology: Computational Design of Membrane Proteins, Volume 2315, Editors: Irina Moreira, Joana Mourão, Miguel Machuqueiro. In Press.
Improved GROMOS 54A7 Charge Sets for Phosphorylated Tyr, Ser, and Thr to Deal with pH-Dependent Binding Phenomena
Computational biochemist currently integrated in the Machuqueiro Computational Biophysics Lab, specializing in constant-pH MD, enhanced sampling methods, membrane biophysics, and AI-driven peptide/drug design.
Experienced in computational technique application to health related problems, force field development, and inter-disciplinary collaboration across computational and wet-lab groups.
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