Binod R.

IRTA Fellow (Bioinformatics)

Gaithersburg, United States

Experience

Jan 2023 - Dec 2023
1 year

The Himalayan uplift and evolution of aquatic biodiversity across Asia: Snowtrout (Cyprininae: Schizothorax) as a test case

PLOS One

B Regmi, MR Douglas, K Wangchuk, ZD Zbinden, DR Edds, S Tshering, ... PLOS One 18 (10), e0289736

Jan 2021 - Dec 2021
1 year

Geometric morphometric analyses define riverine and lacustrine species-flocks of Himalayan snowtrout (Cyprinidae: Schizothorax)

Aquatic Biology

MED Binod Regmi*, Marlis R. Douglas, David R. Edds Aquatic Biology 30, 19-31

Jan 2021 - Dec 2021
1 year

Parallel introgression, not recurrent emergence, explains apparent elevational ecotypes of polyploid Himalayan snowtrout

Royal Society Open Science

TK Chafin, B Regmi, MR Douglas, DR Edds, K Wangchuk, S Dorji, ... Royal Society Open Science 8 (10), 210727

Jan 2019 - Dec 2019
1 year

A dynamic linear model of monthly minimum and maximum temperature changes in three physiographic regions of the Central

Climate Research

B Regmi, S Lamichhane Climate Research 79, 1-8

Jan 2019 - Dec 2019
1 year

Phylogenomics and Geometric Morphometrics Define Species Flocks of Snowtrout (Teleostei: Schizothorax) in the Central Himalayas

University of Arkansas

B Regmi University of Arkansas

Jan 2017 - Dec 2017
1 year

Habitat type and climate zone correlate with genome size variation in osteichthyes fishes

B Regmi, Braj Wagle

Jan 2017 - Dec 2017
1 year

RichPathR: a gene set enrichment analysis and visualization tool

bioRxiv

SRB Binod Regmi, Hong-Wei Sun, Andrew J Uhlman bioRxiv

Jan 2016 - Dec 2016
1 year

Salinity and hydrological barriers have little influence on genetic structure of the mosquitofish in a coastal landscape shaped

Hydrobiologia

B Regmi, MR Douglas, WJB Anthonysamy, ME Douglas, PL Leberg Hydrobiologia 777 (1), 209-223

Summary

Innovative Bioinformatics Scientist/Developer trained in Statistics, Biology, and Programming with over 5 years of experience integrating statistics, biology and programming to drive clinical and multiomics research, and machine learning tool development. Proven track record designing and implementing 20+ robust, reproducible Snakemake workflows, efficiently processing over 20,000 bulk RNA-Seq, WGS, Exome, lrRNA, scRNA and spatial transcriptomic samples on HPC(Biowulf) and cloud (Azure) environments. Collaborated closely with 50+ researchers including Staff Scientists, Physician Scientists, and Research Investigators at NIH and abroad. Certified in Advanced Cancer Discovery (NIH/FAES) and Microsoft AZ-900. Passionate about advancing precision medicine by applying deep domain knowledge in population genetics, cancer biology and immunology, complemented by expertise in biostatistical analysis and scientific programming.

Languages

English
Advanced
Nepali
Advanced
Hindi
Intermediate

Education

Oct 2016 - Jun 2018

University of Arkansas

M.Sc. · Statistics and Analytics · Fayetteville, United States

Oct 2013 - Jun 2019

University of Arkansas

Ph.D. · Biological Sciences · Fayetteville, United States

Certifications & licenses

AZ-900

Microsoft

Advanced Cancer Biology Discovery Micro Credential And Digital Badge

Foundation For Advanced Study, Academic Program Of NIH

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